GLAM2 discovers novel, gapped motifs (recurring, variable-length patterns) in your DNA or protein sequences (sample output from sequences).
GLAM2 discovers novel, gapped motifs (recurring, variable-length patterns) in your DNA or protein sequences (sample output from sequences).
GLAM2 is a tool for discovering gapped motifs in a group of DNA or protein sequences. Equivalently, it is a tool for aligning similar regions in a group of ...
You give glam2 a set of sequences, and it finds the strongest motif shared by these sequences. More exactly, glam2 gives you an alignment of segments of the ...
Discovering Sequence Motifs with Arbitrary Insertions and Deletions
www.ncbi.nlm.nih.gov › PMC2323616
glam2 is a generalization of the gapless Gibbs sampling algorithm. It re-discovers variable-width protein motifs from the PROSITE database significantly more ...
Summary: GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: ...
Glam2 doesn't provide a built in statistical significance estimate for the motifs it discovers. The glam2 score provides a relative measure of the motif quality ...
GLAM2SCAN is a tool for finding occurrences of a GLAM2 motif in a sequence database. Because GLAM2 motifs may contain gaps, standard search tools such as ...
GLAM2 edit. Gapped local alignment of motifs (GLAM 2) is a tool for discovering gapped motifs in a group of DNA or protein sequences. Unlike MEME, GLAM2 does ...